PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G221900.2
Common NameB456_008G221900, LOC105764962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 225aa    MW: 25346.5 Da    PI: 8.9644
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G221900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.4e-332983155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Gorai.008G221900.2 29 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 83
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6192686IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-322684IPR009057Homeodomain-like
SuperFamilySSF466891.79E-162986IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-252984IPR006447Myb domain, plants
PfamPF002495.7E-93182IPR001005SANT/Myb domain
PfamPF143792.8E-20118163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MERLNYGGGG GGEGNYWYEN EVVMSRDPKP RLRWTADLHD RFVDAVTKLG GPDKATPKSV  60
LRLMGMKGLT LYHLKSHLQK YRLGQQTRKQ NAVDLNKVNG GTIITNSPRA DSEQRQIPVA  120
EALKNQLEVQ QTLQEQLEVE KKLQMRIDAQ GKYLQAILEK AQKRVSIDIN YCEGNGEEET  180
NFSVLNKANC SAFQNYGGRR RENSKDVKLE VEGDSTAFDL KDQT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439260.11e-167PREDICTED: myb family transcription factor APL-like isoform X3
SwissprotQ9SAK53e-47APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0D2U7N71e-167A0A0D2U7N7_G
STRINGPOPTR_0003s09940.12e-76(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.11e-54G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]